Analysis Type:	PANTHER Enrichment Test (release 20220712)
Annotation Version and Release Date:	GO Ontology database DOI:  10.5281/zenodo.6799722 Released 2022-07-01
Analyzed List:	SDE_Symptomatic_Day_25_vs_Day_18.txt (Sus scrofa)
Correction:	BONFERRONI
Bonferroni count:	3240
GO biological process complete	number	overUnder	pvalue
nitrogen compound metabolic process (GO:0006807)	1481	+	0.00E00
organic substance metabolic process (GO:0071704)	1660	+	0.00E00
nucleic acid metabolic process (GO:0090304)	468	+	0.00E00
cellular macromolecule catabolic process (GO:0044265)	174	+	0.00E00
cellular macromolecule metabolic process (GO:0044260)	555	+	0.00E00
primary metabolic process (GO:0044238)	1579	+	0.00E00
cellular metabolic process (GO:0044237)	1451	+	0.00E00
Unclassified (UNCLASSIFIED)	583	-	0.00E00
macromolecule metabolic process (GO:0043170)	1305	+	0.00E00
macromolecule catabolic process (GO:0009057)	224	+	0.00E00
RNA metabolic process (GO:0016070)	372	+	0.00E00
cellular nitrogen compound metabolic process (GO:0034641)	762	+	0.00E00
gene expression (GO:0010467)	521	+	0.00E00
metabolic process (GO:0008152)	1761	+	0.00E00
protein metabolic process (GO:0019538)	922	+	0.00E00
organonitrogen compound metabolic process (GO:1901564)	1134	+	3.60E-13
macromolecule modification (GO:0043412)	662	+	3.60E-13
protein modification process (GO:0036211)	618	+	3.60E-13
regulation of macromolecule metabolic process (GO:0060255)	1190	+	1.08E-12
regulation of cellular metabolic process (GO:0031323)	1073	+	3.24E-12
regulation of primary metabolic process (GO:0080090)	1120	+	3.60E-12
proteolysis involved in protein catabolic process (GO:0051603)	154	+	3.60E-12
protein catabolic process (GO:0030163)	170	+	4.32E-12
cellular response to stress (GO:0033554)	305	+	5.04E-12
regulation of gene expression (GO:0010468)	940	+	5.40E-12
regulation of nitrogen compound metabolic process (GO:0051171)	1095	+	6.12E-12
modification-dependent macromolecule catabolic process (GO:0043632)	137	+	6.47E-12
regulation of metabolic process (GO:0019222)	1283	+	6.83E-12
modification-dependent protein catabolic process (GO:0019941)	133	+	7.55E-12
ubiquitin-dependent protein catabolic process (GO:0006511)	130	+	1.94E-11
nucleobase-containing compound metabolic process (GO:0006139)	577	+	2.23E-11
translation (GO:0006412)	131	+	4.17E-11
negative regulation of macromolecule metabolic process (GO:0010605)	537	+	7.01E-11
negative regulation of metabolic process (GO:0009892)	572	+	1.16E-10
peptide biosynthetic process (GO:0043043)	133	+	1.22E-10
negative regulation of cellular metabolic process (GO:0031324)	416	+	1.93E-10
macromolecule biosynthetic process (GO:0009059)	347	+	4.41E-10
regulation of protein metabolic process (GO:0051246)	511	+	4.79E-10
post-transcriptional regulation of gene expression (GO:0010608)	112	+	5.24E-10
RNA processing (GO:0006396)	210	+	7.44E-10
positive regulation of macromolecule metabolic process (GO:0010604)	700	+	9.59E-10
regulation of macromolecule biosynthetic process (GO:0010556)	744	+	9.70E-10
negative regulation of nitrogen compound metabolic process (GO:0051172)	444	+	1.22E-09
regulation of biosynthetic process (GO:0009889)	779	+	1.65E-09
regulation of nucleobase-containing compound metabolic process (GO:0019219)	773	+	1.92E-09
regulation of cellular biosynthetic process (GO:0031326)	762	+	1.93E-09
peptide metabolic process (GO:0006518)	161	+	2.75E-09
heterocycle metabolic process (GO:0046483)	608	+	3.37E-09
positive regulation of metabolic process (GO:0009893)	746	+	5.20E-09
cellular aromatic compound metabolic process (GO:0006725)	614	+	1.05E-08
amide biosynthetic process (GO:0043604)	157	+	1.36E-08
negative regulation of gene expression (GO:0010629)	213	+	1.76E-08
protein modification by small protein conjugation or removal (GO:0070647)	185	+	1.77E-08
regulation of RNA metabolic process (GO:0051252)	714	+	1.99E-08
positive regulation of nitrogen compound metabolic process (GO:0051173)	614	+	4.45E-08
regulation of translation (GO:0006417)	87	+	6.69E-08
positive regulation of cellular metabolic process (GO:0031325)	601	+	1.02E-07
regulation of cellular macromolecule biosynthetic process (GO:2000112)	105	+	1.37E-07
organic substance catabolic process (GO:1901575)	350	+	1.47E-07
histone modification (GO:0016570)	98	+	1.56E-07
cellular macromolecule biosynthetic process (GO:0034645)	219	+	2.33E-07
mRNA metabolic process (GO:0016071)	142	+	2.66E-07
cellular nitrogen compound biosynthetic process (GO:0044271)	350	+	3.58E-07
organic cyclic compound metabolic process (GO:1901360)	651	+	4.40E-07
cellular catabolic process (GO:0044248)	327	+	4.54E-07
protein modification by small protein conjugation (GO:0032446)	145	+	4.59E-07
mRNA processing (GO:0006397)	94	+	6.08E-07
regulation of cell cycle (GO:0051726)	205	+	8.19E-07
regulation of cellular amide metabolic process (GO:0034248)	98	+	1.03E-06
protein ubiquitination (GO:0016567)	139	+	1.08E-06
positive regulation of nucleobase-containing compound metabolic process (GO:0045935)	405	+	1.09E-06
catabolic process (GO:0009056)	392	+	1.14E-06
organonitrogen compound catabolic process (GO:1901565)	234	+	1.19E-06
proteasomal protein catabolic process (GO:0010498)	93	+	1.98E-06
cellular amide metabolic process (GO:0043603)	214	+	2.08E-06
regulation of mRNA metabolic process (GO:1903311)	71	+	4.67E-06
chromatin organization (GO:0006325)	98	+	6.82E-06
proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161)	80	+	6.86E-06
regulation of RNA splicing (GO:0043484)	47	+	7.22E-06
positive regulation of RNA metabolic process (GO:0051254)	369	+	1.43E-05
regulation of programmed cell death (GO:0043067)	285	+	1.49E-05
regulation of cell death (GO:0010941)	316	+	1.85E-05
negative regulation of biosynthetic process (GO:0009890)	291	+	1.95E-05
RNA splicing (GO:0008380)	76	+	2.13E-05
negative regulation of protein metabolic process (GO:0051248)	206	+	2.16E-05
regulation of apoptotic process (GO:0042981)	275	+	2.41E-05
negative regulation of macromolecule biosynthetic process (GO:0010558)	278	+	2.53E-05
peptidyl-amino acid modification (GO:0018193)	192	+	2.86E-05
positive regulation of cellular process (GO:0048522)	1042	+	3.35E-05
negative regulation of cellular biosynthetic process (GO:0031327)	287	+	5.27E-05
organic substance biosynthetic process (GO:1901576)	541	+	5.42E-05
regulation of nucleic acid-templated transcription (GO:1903506)	631	+	5.80E-05
regulation of catalytic activity (GO:0050790)	439	+	6.40E-05
regulation of RNA biosynthetic process (GO:2001141)	632	+	6.44E-05
positive regulation of cellular biosynthetic process (GO:0031328)	395	+	6.65E-05
regulation of DNA-templated transcription (GO:0006355)	630	+	8.12E-05
response to stress (GO:0006950)	570	+	8.88E-05
cellular biosynthetic process (GO:0044249)	517	+	1.12E-04
negative regulation of cellular process (GO:0048523)	829	+	1.19E-04
negative regulation of biological process (GO:0048519)	950	+	1.26E-04
positive regulation of biosynthetic process (GO:0009891)	402	+	1.49E-04
regulation of catabolic process (GO:0009894)	194	+	1.55E-04
negative regulation of nucleobase-containing compound metabolic process (GO:0045934)	279	+	1.58E-04
positive regulation of macromolecule biosynthetic process (GO:0010557)	383	+	1.69E-04
regulation of protein modification process (GO:0031399)	312	+	1.71E-04
regulation of cellular catabolic process (GO:0031329)	155	+	1.74E-04
biosynthetic process (GO:0009058)	551	+	1.96E-04
cytoplasmic translation (GO:0002181)	23	+	2.13E-04
proteolysis (GO:0006508)	264	+	2.58E-04
response to endoplasmic reticulum stress (GO:0034976)	55	+	2.59E-04
regulation of apoptotic signaling pathway (GO:2001233)	89	+	2.90E-04
positive regulation of biological process (GO:0048518)	1162	+	3.63E-04
regulation of mRNA processing (GO:0050684)	35	+	4.13E-04
regulation of DNA metabolic process (GO:0051052)	87	+	4.41E-04
protein folding (GO:0006457)	52	+	4.48E-04
mRNA splicing, via spliceosome (GO:0000398)	62	+	4.92E-04
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile (GO:0000377)	62	+	4.92E-04
RNA splicing, via transesterification reactions (GO:0000375)	62	+	4.92E-04
positive regulation of gene expression (GO:0010628)	241	+	6.61E-04
G protein-coupled receptor signaling pathway (GO:0007186)	119	-	7.17E-04
programmed cell death (GO:0012501)	170	+	7.52E-04
cellular response to DNA damage stimulus (GO:0006974)	117	+	7.98E-04
regulation of molecular function (GO:0065009)	573	+	8.59E-04
negative regulation of RNA metabolic process (GO:0051253)	254	+	8.64E-04
immune system process (GO:0002376)	398	+	9.64E-04
phosphorylation (GO:0016310)	243	+	1.41E-03
peptidyl-lysine acetylation (GO:0018394)	46	+	1.42E-03
ribonucleoprotein complex biogenesis (GO:0022613)	122	+	1.61E-03
apoptotic process (GO:0006915)	156	+	1.68E-03
internal protein amino acid acetylation (GO:0006475)	45	+	1.93E-03
internal peptidyl-lysine acetylation (GO:0018393)	45	+	1.93E-03
histone acetylation (GO:0016573)	45	+	1.93E-03
positive regulation of nucleic acid-templated transcription (GO:1903508)	335	+	2.06E-03
positive regulation of DNA-templated transcription (GO:0045893)	335	+	2.06E-03
positive regulation of RNA biosynthetic process (GO:1902680)	336	+	2.36E-03
protein localization to organelle (GO:0033365)	131	+	2.60E-03
regulation of immune system process (GO:0002682)	299	+	2.67E-03
regulation of transcription by RNA polymerase II (GO:0006357)	465	+	3.50E-03
negative regulation of protein modification process (GO:0031400)	108	+	3.63E-03
positive regulation of protein metabolic process (GO:0051247)	296	+	3.74E-03
cellular localization (GO:0051641)	490	+	4.42E-03
regulation of immune response (GO:0050776)	185	+	4.54E-03
regulation of cellular localization (GO:0060341)	169	+	4.80E-03
response to organic substance (GO:0010033)	495	+	4.90E-03
cell death (GO:0008219)	174	+	4.90E-03
regulation of cell cycle process (GO:0010564)	127	+	5.07E-03
positive regulation of programmed cell death (GO:0043068)	108	+	5.47E-03
immune system development (GO:0002520)	163	+	6.87E-03
chromatin remodeling (GO:0006338)	59	+	7.11E-03
negative regulation of translation (GO:0017148)	42	+	7.29E-03
T cell differentiation (GO:0030217)	40	+	7.60E-03
histone H4 acetylation (GO:0043967)	22	+	8.07E-03
peptidyl-lysine modification (GO:0018205)	71	+	8.29E-03
regulation of protein modification by small protein conjugation or removal (GO:1903320)	50	+	8.87E-03
intracellular transport (GO:0046907)	280	+	9.49E-03
biological process involved in interspecies interaction between organisms (GO:0044419)	249	+	1.11E-02
positive regulation of apoptotic process (GO:0043065)	105	+	1.13E-02
regulation of translational initiation (GO:0006446)	21	+	1.15E-02
protein polyubiquitination (GO:0000209)	49	+	1.17E-02
cell cycle (GO:0007049)	157	+	1.20E-02
translational initiation (GO:0006413)	31	+	1.29E-02
regulation of chromosome organization (GO:0033044)	39	+	1.29E-02
ribonucleoprotein complex subunit organization (GO:0071826)	56	+	1.31E-02
protein-containing complex organization (GO:0043933)	293	+	1.36E-02
macromolecule localization (GO:0033036)	429	+	1.38E-02
regulation of intracellular signal transduction (GO:1902531)	315	+	1.44E-02
cellular process (GO:0009987)	2913	+	1.47E-02
ribonucleoprotein complex assembly (GO:0022618)	54	+	1.59E-02
regulation of protein-containing complex assembly (GO:0043254)	78	+	1.62E-02
positive regulation of cell death (GO:0010942)	118	+	1.62E-02
regulation of mRNA splicing, via spliceosome (GO:0048024)	29	+	1.64E-02
negative regulation of cellular macromolecule biosynthetic process (GO:2000113)	43	+	1.64E-02
hemopoiesis (GO:0030097)	147	+	1.76E-02
protein phosphorylation (GO:0006468)	182	+	2.01E-02
regulation of intracellular transport (GO:0032386)	61	+	2.06E-02
lymphocyte activation (GO:0046649)	90	+	2.12E-02
establishment of RNA localization (GO:0051236)	22	+	2.35E-02
RNA transport (GO:0050658)	22	+	2.35E-02
nucleic acid transport (GO:0050657)	22	+	2.35E-02
negative regulation of cellular amide metabolic process (GO:0034249)	45	+	2.52E-02
organonitrogen compound biosynthetic process (GO:1901566)	324	+	2.75E-02
mitotic cell cycle process (GO:1903047)	78	+	2.87E-02
positive regulation of apoptotic signaling pathway (GO:2001235)	36	+	2.91E-02
gene silencing by RNA (GO:0031047)	20	+	2.98E-02
protein acetylation (GO:0006473)	50	+	2.98E-02
hematopoietic or lymphoid organ development (GO:0048534)	156	+	3.29E-02
regulation of viral process (GO:0050792)	38	+	3.30E-02
protein acylation (GO:0043543)	62	+	3.40E-02
negative regulation of RNA biosynthetic process (GO:1902679)	229	+	3.59E-02
negative regulation of nucleic acid-templated transcription (GO:1903507)	229	+	3.59E-02
positive regulation of DNA metabolic process (GO:0051054)	52	+	3.74E-02
alpha-beta T cell activation (GO:0046631)	16	+	3.92E-02
regulation of intrinsic apoptotic signaling pathway (GO:2001242)	41	+	4.43E-02
protein-containing complex assembly (GO:0065003)	266	+	4.44E-02
nucleocytoplasmic transport (GO:0006913)	47	+	4.53E-02
nuclear transport (GO:0051169)	47	+	4.53E-02
regulation of ubiquitin-dependent protein catabolic process (GO:2000058)	39	+	4.61E-02
